IL_5NG8_323

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_323 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1931

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NG8|1|Ba|C|1313
5NG8|1|Ba|G|1314
5NG8|1|Ba|G|1315
5NG8|1|Ba|A|1316
5NG8|1|Ba|U|1317
5NG8|1|Ba|U|1318
*
5NG8|1|Ba|A|1339
5NG8|1|Ba|U|1340
5NG8|1|Ba|G|1341
5NG8|1|Ba|A|1342
5NG8|1|Ba|A|1343
5NG8|1|Ba|G|1344

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bm

30S ribosomal protein S13