IL_5NG8_325

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_325 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2323

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NG8|1|Ba|G|1411
5NG8|1|Ba|C|1412
5NG8|1|Ba|C|1413
5NG8|1|Ba|C|1414
*
5NG8|1|Ba|G|1508
5NG8|1|Ba|U|1509
5NG8|1|Ba|A|1510
5NG8|1|Ba|A|1511
5NG8|1|Ba|C|1512

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bv

Ribosome hibernation promotion factor