IL_5NG8_335

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

5NG8|1|AA|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_335 not in the Motif Atlas

Geometric match to IL_9DFE_004

Geometric discrepancy: 0.1364

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

5NG8|1|AA|G|81
5NG8|1|AA|G|82
5NG8|1|AA|G|83
5NG8|1|AA|A|84
5NG8|1|AA|G|85
*
5NG8|1|AA|C|97
5NG8|1|AA|U|98
5NG8|1|AA|U|99
5NG8|1|AA|U|100
5NG8|1|AA|G|101
5NG8|1|AA|A|102
5NG8|1|AA|U|103
5NG8|1|AA|C|104

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L24

Chain AW

50S ribosomal protein L29