IL_5NGM_002
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GAC
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- 489A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_002 not in the Motif Atlas
- Homologous match to IL_7RQB_002
- Geometric discrepancy: 0.1988
- The information below is about IL_7RQB_002
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_37497.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 118
Unit IDs
5NGM|1|AA|G|36
5NGM|1|AA|C|37
*
5NGM|1|AA|G|488
5NGM|1|AA|A|489
5NGM|1|AA|C|490
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L4
- Chain AO
- 50S ribosomal protein L20
Coloring options: