IL_5NGM_009

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_009 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0804

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

5NGM|1|AA|C|241
5NGM|1|AA|U|242
5NGM|1|AA|U|243
5NGM|1|AA|A|244
5NGM|1|AA|G|245
5NGM|1|AA|U|246
5NGM|1|AA|A|247
5NGM|1|AA|G|248
*
5NGM|1|AA|C|256
5NGM|1|AA|G|257
5NGM|1|AA|A|258
5NGM|1|AA|A|259
5NGM|1|AA|A|260
5NGM|1|AA|U|261
5NGM|1|AA|G|262

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15