IL_5NGM_029
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_029 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0794
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|AA|G|901
5NGM|1|AA|A|902
5NGM|1|AA|G|903
5NGM|1|AA|G|904
5NGM|1|AA|U|905
5NGM|1|AA|A|906
5NGM|1|AA|G|907
*
5NGM|1|AA|C|960
5NGM|1|AA|G|961
5NGM|1|AA|A|962
5NGM|1|AA|A|963
5NGM|1|AA|U|964
5NGM|1|AA|G|965
5NGM|1|AA|C|966
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AK
- 50S ribosomal protein L16
- Chain AU
- 50S ribosomal protein L27
- Chain AX
- 50S ribosomal protein L30
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