IL_5NGM_032

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_032 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5669

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NGM|1|AA|A|920
5NGM|1|AA|C|921
5NGM|1|AA|G|922
5NGM|1|AA|A|923
5NGM|1|AA|G|924
*
5NGM|1|AA|C|943
5NGM|1|AA|G|944
5NGM|1|AA|A|945
5NGM|1|AA|A|946
5NGM|1|AA|U|947

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16