IL_5NGM_033

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5NGM|1|AA|C|1039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_033 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.1202

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5NGM|1|AA|C|1038
5NGM|1|AA|C|1039
5NGM|1|AA|A|1040
*
5NGM|1|AA|U|1203
5NGM|1|AA|G|1204

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L13

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21

Chain AX

50S ribosomal protein L30