IL_5NGM_037
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 5NGM|1|AA|A|1187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_037 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1066
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5NGM|1|AA|U|1062
5NGM|1|AA|U|1063
5NGM|1|AA|A|1064
5NGM|1|AA|A|1065
5NGM|1|AA|G|1066
5NGM|1|AA|U|1067
5NGM|1|AA|G|1068
*
5NGM|1|AA|C|1184
5NGM|1|AA|U|1185
5NGM|1|AA|A|1186
5NGM|1|AA|A|1187
5NGM|1|AA|A|1188
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A4
- 50S ribosomal protein L36
- Chain AH
- 50S ribosomal protein L13
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