IL_5NGM_041

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5NGM|1|AA|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_041 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1031

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

5NGM|1|AA|C|1235
5NGM|1|AA|G|1236
5NGM|1|AA|U|1237
*
5NGM|1|AA|A|1285
5NGM|1|AA|G|1286
5NGM|1|AA|U|1287
5NGM|1|AA|G|1288

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AJ

50S ribosomal protein L15

Chain AO

50S ribosomal protein L20