IL_5NGM_044

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*GAC

Length

6 nucleotides

Bulged bases

5NGM|1|AA|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_044 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.133

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5NGM|1|AA|G|1257
5NGM|1|AA|A|1258
5NGM|1|AA|U|1259
*
5NGM|1|AA|G|1266
5NGM|1|AA|A|1267
5NGM|1|AA|C|1268

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21