IL_5NGM_045

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_045 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.0815

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5NGM|1|AA|G|1300
5NGM|1|AA|U|1301
5NGM|1|AA|G|1302
5NGM|1|AA|A|1303
5NGM|1|AA|G|1304
5NGM|1|AA|U|1305
5NGM|1|AA|A|1306
5NGM|1|AA|G|1307
*
5NGM|1|AA|U|2038
5NGM|1|AA|G|2039
5NGM|1|AA|A|2040
5NGM|1|AA|A|2041
5NGM|1|AA|A|2042
5NGM|1|AA|U|2043
5NGM|1|AA|C|2044

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32