IL_5NGM_048

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_048 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1649

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5NGM|1|AA|U|1394
5NGM|1|AA|G|1395
5NGM|1|AA|A|1396
5NGM|1|AA|G|1397
5NGM|1|AA|G|1398
*
5NGM|1|AA|C|1407
5NGM|1|AA|G|1408
5NGM|1|AA|U|1409
5NGM|1|AA|A|1410
5NGM|1|AA|G|1411

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AC

50S ribosomal protein L2

Chain AV

50S ribosomal protein L28