IL_5NGM_051

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_051 not in the Motif Atlas

Homologous match to IL_4WF9_122

Geometric discrepancy: 0.2566

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5NGM|1|AA|G|1476
5NGM|1|AA|U|1477
5NGM|1|AA|A|1478
5NGM|1|AA|G|1479
5NGM|1|AA|G|1480
*
5NGM|1|AA|C|1604
5NGM|1|AA|A|1605
5NGM|1|AA|C|1606
5NGM|1|AA|A|1607
5NGM|1|AA|C|1608

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains