Loop IL_5NGM

3D structure

PDB id: 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GCGAAGCGUGCGAUUGGAUUGCACGUC*GGGAGAAGACAUUGUGUCUUCGAGUCGUU
Length: 56 nucleotides
Bulged bases: 5NGM|1|AA|A|1489, 5NGM|1|AA|A|1497, 5NGM|1|AA|U|1503
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NGM|1|AA|G|1485
5NGM|1|AA|C|1486
5NGM|1|AA|G|1487
5NGM|1|AA|A|1488
5NGM|1|AA|A|1489
5NGM|1|AA|G|1490
5NGM|1|AA|C|1491
5NGM|1|AA|G|1492
5NGM|1|AA|U|1493
5NGM|1|AA|G|1494
5NGM|1|AA|C|1495
5NGM|1|AA|G|1496
5NGM|1|AA|A|1497
5NGM|1|AA|U|1498
5NGM|1|AA|U|1499
5NGM|1|AA|G|1500
5NGM|1|AA|G|1501
5NGM|1|AA|A|1502
5NGM|1|AA|U|1503
5NGM|1|AA|U|1504
5NGM|1|AA|G|1505
5NGM|1|AA|C|1506
5NGM|1|AA|A|1507
5NGM|1|AA|C|1508
5NGM|1|AA|G|1509
5NGM|1|AA|U|1510
5NGM|1|AA|C|1511
*
5NGM|1|AA|G|1570
5NGM|1|AA|G|1571
5NGM|1|AA|G|1572
5NGM|1|AA|A|1573
5NGM|1|AA|G|1574
5NGM|1|AA|A|1575
5NGM|1|AA|A|1576
5NGM|1|AA|G|1577
5NGM|1|AA|A|1578
5NGM|1|AA|C|1579
5NGM|1|AA|A|1580
5NGM|1|AA|U|1581
5NGM|1|AA|U|1582
5NGM|1|AA|G|1583
5NGM|1|AA|U|1584
5NGM|1|AA|G|1585
5NGM|1|AA|U|1586
5NGM|1|AA|C|1587
5NGM|1|AA|U|1588
5NGM|1|AA|U|1589
5NGM|1|AA|C|1590
5NGM|1|AA|G|1591
5NGM|1|AA|A|1592
5NGM|1|AA|G|1593
5NGM|1|AA|U|1594
5NGM|1|AA|C|1595
5NGM|1|AA|G|1596
5NGM|1|AA|U|1597
5NGM|1|AA|U|1598

Current chains

Chain AA: 23S Ribosomal RNA

Nearby chains

Chain AL: 50S ribosomal protein L17

IL_5NGM_053