IL_5NGM_054

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAGC*GUGAUGG

Length

13 nucleotides

Bulged bases

5NGM|1|AA|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_054 not in the Motif Atlas

Homologous match to IL_4WF9_058

Geometric discrepancy: 0.1565

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5NGM|1|AA|C|1511
5NGM|1|AA|U|1512
5NGM|1|AA|A|1513
5NGM|1|AA|A|1514
5NGM|1|AA|G|1515
5NGM|1|AA|C|1516
*
5NGM|1|AA|G|1564
5NGM|1|AA|U|1565
5NGM|1|AA|G|1566
5NGM|1|AA|A|1567
5NGM|1|AA|U|1568
5NGM|1|AA|G|1569
5NGM|1|AA|G|1570

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains