IL_5NGM_062

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5NGM|1|AA|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_062 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1299

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5NGM|1|AA|C|1730
5NGM|1|AA|G|1731
5NGM|1|AA|U|1732
5NGM|1|AA|A|1733
5NGM|1|AA|A|1734
5NGM|1|AA|C|1735
*
5NGM|1|AA|G|1740
5NGM|1|AA|G|1741
5NGM|1|AA|A|1742
5NGM|1|AA|G|1743
5NGM|1|AA|A|1744
5NGM|1|AA|A|1745
5NGM|1|AA|G|1746

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA