IL_5NGM_065

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5NGM|1|AA|U|1828, 5NGM|1|AA|U|1843, 5NGM|1|AA|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0711

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5NGM|1|AA|U|1825
5NGM|1|AA|G|1826
5NGM|1|AA|C|1827
5NGM|1|AA|U|1828
5NGM|1|AA|A|1829
5NGM|1|AA|A|1830
5NGM|1|AA|A|1831
*
5NGM|1|AA|U|1840
5NGM|1|AA|G|1841
5NGM|1|AA|A|1842
5NGM|1|AA|U|1843
5NGM|1|AA|G|1844
5NGM|1|AA|U|1845
5NGM|1|AA|A|1846
5NGM|1|AA|U|1847
5NGM|1|AA|A|1848

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA