IL_5NGM_071

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5NGM|1|AA|A|1965, 5NGM|1|AA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_071 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.248

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5NGM|1|AA|C|1961
5NGM|1|AA|G|1962
5NGM|1|AA|A|1963
5NGM|1|AA|A|1964
5NGM|1|AA|A|1965
5NGM|1|AA|U|1966
5NGM|1|AA|U|1967
5NGM|1|AA|C|1968
5NGM|1|AA|C|1969
5NGM|1|AA|U|1970
5NGM|1|AA|U|1971
5NGM|1|AA|G|1972
*
5NGM|1|AA|C|1988
5NGM|1|AA|C|1989
5NGM|1|AA|C|1990
5NGM|1|AA|G|1991

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA