3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUUUGAAACGUGAG*CUUACGUGGAG
Length
25 nucleotides
Bulged bases
5NGM|1|AA|U|2158, 5NGM|1|AA|U|2159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5NGM|1|AA|C|2156
5NGM|1|AA|U|2157
5NGM|1|AA|U|2158
5NGM|1|AA|U|2159
5NGM|1|AA|G|2160
5NGM|1|AA|A|2161
5NGM|1|AA|A|2162
5NGM|1|AA|A|2163
5NGM|1|AA|C|2164
5NGM|1|AA|G|2165
5NGM|1|AA|U|2166
5NGM|1|AA|G|2167
5NGM|1|AA|A|2168
5NGM|1|AA|G|2169
*
5NGM|1|AA|C|2176
5NGM|1|AA|U|2177
5NGM|1|AA|U|2178
5NGM|1|AA|A|2179
5NGM|1|AA|C|2180
5NGM|1|AA|G|2181
5NGM|1|AA|U|2182
5NGM|1|AA|G|2183
5NGM|1|AA|G|2184
5NGM|1|AA|A|2185
5NGM|1|AA|G|2186

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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