IL_5NGM_086

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_086 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.0928

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5NGM|1|AA|A|2486
5NGM|1|AA|U|2487
5NGM|1|AA|C|2488
*
5NGM|1|AA|G|2516
5NGM|1|AA|G|2517
5NGM|1|AA|U|2518
5NGM|1|AA|U|2519
5NGM|1|AA|U|2520

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27