IL_5NGM_102

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

5NGM|1|AB|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_102 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.2616

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5NGM|1|AB|C|15
5NGM|1|AB|A|16
*
5NGM|1|AB|U|63
5NGM|1|AB|A|64
5NGM|1|AB|G|65

Current chains

Chain AB

5S Ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AM

50S ribosomal protein L18