IL_5NGM_104
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_104 not in the Motif Atlas
- Homologous match to IL_7RQB_113
- Geometric discrepancy: 0.1736
- The information below is about IL_7RQB_113
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_09061.8
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 14
Unit IDs
5NGM|1|AB|C|28
5NGM|1|AB|C|29
*
5NGM|1|AB|G|49
5NGM|1|AB|A|50
5NGM|1|AB|A|51
5NGM|1|AB|G|52
Current chains
- Chain AB
- 5S Ribosomal RNA
Nearby chains
- Chain AF
- 50S ribosomal protein L5
- Chain AM
- 50S ribosomal protein L18
Coloring options: