IL_5NGM_114

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

5NGM|1|Aa|A|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_114 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.2398

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|U|128
5NGM|1|Aa|A|129
5NGM|1|Aa|A|130
5NGM|1|Aa|C|131
*
5NGM|1|Aa|G|239
5NGM|1|Aa|A|240

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17

Chain At

30S ribosomal protein S20