IL_5NGM_115

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_115 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.1178

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5NGM|1|Aa|C|132
5NGM|1|Aa|U|133
5NGM|1|Aa|A|134
5NGM|1|Aa|C|135
5NGM|1|Aa|C|136
*
5NGM|1|Aa|G|235
5NGM|1|Aa|A|236
5NGM|1|Aa|U|237
5NGM|1|Aa|G|238

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20