IL_5NGM_124

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUGAAGGUC*GAUCGUAAAA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|U|417
5NGM|1|Aa|G|418
5NGM|1|Aa|A|419
5NGM|1|Aa|U|420
5NGM|1|Aa|G|421
5NGM|1|Aa|A|422
5NGM|1|Aa|A|423
5NGM|1|Aa|G|424
5NGM|1|Aa|G|425
5NGM|1|Aa|U|426
5NGM|1|Aa|C|427
*
5NGM|1|Aa|G|432
5NGM|1|Aa|A|433
5NGM|1|Aa|U|434
5NGM|1|Aa|C|435
5NGM|1|Aa|G|436
5NGM|1|Aa|U|437
5NGM|1|Aa|A|438
5NGM|1|Aa|A|439
5NGM|1|Aa|A|440
5NGM|1|Aa|A|441

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4