IL_5NGM_125

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_125 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.2549

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NGM|1|Aa|G|454
5NGM|1|Aa|G|455
5NGM|1|Aa|A|456
5NGM|1|Aa|A|457
5NGM|1|Aa|G|458
*
5NGM|1|Aa|C|491
5NGM|1|Aa|G|492
5NGM|1|Aa|G|493
5NGM|1|Aa|U|494
5NGM|1|Aa|A|495
5NGM|1|Aa|C|496

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ap

30S ribosomal protein S16