IL_5NGM_128

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5NGM|1|Aa|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_128 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.103

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|C|577
5NGM|1|Aa|G|578
5NGM|1|Aa|U|579
5NGM|1|Aa|A|580
5NGM|1|Aa|A|581
5NGM|1|Aa|A|582
5NGM|1|Aa|G|583
*
5NGM|1|Aa|C|889
5NGM|1|Aa|G|890

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S17