IL_5NGM_130

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_130 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1437

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5NGM|1|Aa|U|598
5NGM|1|Aa|U|599
5NGM|1|Aa|U|600
*
5NGM|1|Aa|A|655
5NGM|1|Aa|A|656
5NGM|1|Aa|A|657

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ah

30S ribosomal protein S8

Chain Ao

30S ribosomal protein S15

Chain Aq

30S ribosomal protein S17