IL_5NGM_133

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAAGCC*GAGGGUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|G|612
5NGM|1|Aa|U|613
5NGM|1|Aa|G|614
5NGM|1|Aa|A|615
5NGM|1|Aa|A|616
5NGM|1|Aa|A|617
5NGM|1|Aa|G|618
5NGM|1|Aa|C|619
5NGM|1|Aa|C|620
*
5NGM|1|Aa|G|636
5NGM|1|Aa|A|637
5NGM|1|Aa|G|638
5NGM|1|Aa|G|639
5NGM|1|Aa|G|640
5NGM|1|Aa|U|641
5NGM|1|Aa|C|642

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ah

30S ribosomal protein S8

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17