3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NGM_161 not in the Motif Atlas
Homologous match to IL_5J7L_061
Geometric discrepancy: 0.2527
The information below is about IL_5J7L_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

5NGM|1|Aa|C|1422
5NGM|1|Aa|A|1423
5NGM|1|Aa|C|1424
*
5NGM|1|Aa|G|1497
5NGM|1|Aa|G|1498
5NGM|1|Aa|G|1499

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain Al
30S ribosomal protein S12

Coloring options:


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