IL_5NGM_174
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 5NGM|1|AA|G|2019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_174 not in the Motif Atlas
- Homologous match to IL_4WF9_117
- Geometric discrepancy: 0.0751
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|G|1710
5NGM|1|AA|G|1711
5NGM|1|AA|A|1712
5NGM|1|AA|A|1713
5NGM|1|AA|C|1714
5NGM|1|AA|U|1715
5NGM|1|AA|C|1716
5NGM|1|AA|G|1717
5NGM|1|AA|G|1718
*
5NGM|1|AA|C|2017
5NGM|1|AA|U|2018
5NGM|1|AA|G|2019
5NGM|1|AA|U|2020
5NGM|1|AA|C|2021
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L3
- Chain AI
- 50S ribosomal protein L14
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