3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAACUCGG*CUGUC
Length
14 nucleotides
Bulged bases
5NGM|1|AA|G|2019
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NGM_174 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0751
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

5NGM|1|AA|G|1710
5NGM|1|AA|G|1711
5NGM|1|AA|A|1712
5NGM|1|AA|A|1713
5NGM|1|AA|C|1714
5NGM|1|AA|U|1715
5NGM|1|AA|C|1716
5NGM|1|AA|G|1717
5NGM|1|AA|G|1718
*
5NGM|1|AA|C|2017
5NGM|1|AA|U|2018
5NGM|1|AA|G|2019
5NGM|1|AA|U|2020
5NGM|1|AA|C|2021

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain AD
50S ribosomal protein L3
Chain AI
50S ribosomal protein L14

Coloring options:


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