Loop IL_5NGM

3D structure

PDB id: 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GCUUGUACAGGAUAGGUAGGAGCC*GGCGCUGGUGGGAUACUACCCUAGC
Length: 49 nucleotides
Bulged bases: 5NGM|1|AA|U|2138, 5NGM|1|AA|A|2139, 5NGM|1|AA|G|2143, 5NGM|1|AA|A|2144, 5NGM|1|AA|U|2145, 5NGM|1|AA|A|2153, 5NGM|1|AA|U|2194
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NGM|1|AA|G|2133
5NGM|1|AA|C|2134
5NGM|1|AA|U|2135
5NGM|1|AA|U|2136
5NGM|1|AA|G|2137
5NGM|1|AA|U|2138
5NGM|1|AA|A|2139
5NGM|1|AA|C|2140
5NGM|1|AA|A|2141
5NGM|1|AA|G|2142
5NGM|1|AA|G|2143
5NGM|1|AA|A|2144
5NGM|1|AA|U|2145
5NGM|1|AA|A|2146
5NGM|1|AA|G|2147
5NGM|1|AA|G|2148
5NGM|1|AA|U|2149
5NGM|1|AA|A|2150
5NGM|1|AA|G|2151
5NGM|1|AA|G|2152
5NGM|1|AA|A|2153
5NGM|1|AA|G|2154
5NGM|1|AA|C|2155
5NGM|1|AA|C|2156
*
5NGM|1|AA|G|2186
5NGM|1|AA|G|2187
5NGM|1|AA|C|2188
5NGM|1|AA|G|2189
5NGM|1|AA|C|2190
5NGM|1|AA|U|2191
5NGM|1|AA|G|2192
5NGM|1|AA|G|2193
5NGM|1|AA|U|2194
5NGM|1|AA|G|2195
5NGM|1|AA|G|2196
5NGM|1|AA|G|2197
5NGM|1|AA|A|2198
5NGM|1|AA|U|2199
5NGM|1|AA|A|2200
5NGM|1|AA|C|2201
5NGM|1|AA|U|2202
5NGM|1|AA|A|2203
5NGM|1|AA|C|2204
5NGM|1|AA|C|2205
5NGM|1|AA|C|2206
5NGM|1|AA|U|2207
5NGM|1|AA|A|2208
5NGM|1|AA|G|2209
5NGM|1|AA|C|2210

Current chains

Chain AA: 23S Ribosomal RNA

Nearby chains

No other chains within 10Å

IL_5NGM_175