IL_5NGM_179

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAACAUAUG*CAUCUUGAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_179 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.5857

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|G|458
5NGM|1|Aa|A|459
5NGM|1|Aa|A|460
5NGM|1|Aa|C|461
5NGM|1|Aa|A|462
5NGM|1|Aa|U|463
5NGM|1|Aa|A|464
5NGM|1|Aa|U|465
5NGM|1|Aa|G|466
*
5NGM|1|Aa|C|483
5NGM|1|Aa|A|484
5NGM|1|Aa|U|485
5NGM|1|Aa|C|486
5NGM|1|Aa|U|487
5NGM|1|Aa|U|488
5NGM|1|Aa|G|489
5NGM|1|Aa|A|490
5NGM|1|Aa|C|491

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16