Loop IL_5NGM

3D structure

PDB id: 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CCCAGACAACUAGGAU*AUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAG
Length: 49 nucleotides
Bulged bases: 5NGM|1|AA|A|1090, 5NGM|1|AA|G|1099, 5NGM|1|AA|A|1132, 5NGM|1|AA|U|1138
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NGM|1|AA|C|1087
5NGM|1|AA|C|1088
5NGM|1|AA|C|1089
5NGM|1|AA|A|1090
5NGM|1|AA|G|1091
5NGM|1|AA|A|1092
5NGM|1|AA|C|1093
5NGM|1|AA|A|1094
5NGM|1|AA|A|1095
5NGM|1|AA|C|1096
5NGM|1|AA|U|1097
5NGM|1|AA|A|1098
5NGM|1|AA|G|1099
5NGM|1|AA|G|1100
5NGM|1|AA|A|1101
5NGM|1|AA|U|1102
*
5NGM|1|AA|A|1124
5NGM|1|AA|U|1125
5NGM|1|AA|U|1126
5NGM|1|AA|U|1127
5NGM|1|AA|A|1128
5NGM|1|AA|A|1129
5NGM|1|AA|A|1130
5NGM|1|AA|G|1131
5NGM|1|AA|A|1132
5NGM|1|AA|G|1133
5NGM|1|AA|U|1134
5NGM|1|AA|G|1135
5NGM|1|AA|C|1136
5NGM|1|AA|G|1137
5NGM|1|AA|U|1138
5NGM|1|AA|A|1139
5NGM|1|AA|A|1140
5NGM|1|AA|U|1141
5NGM|1|AA|A|1142
5NGM|1|AA|G|1143
5NGM|1|AA|C|1144
5NGM|1|AA|U|1145
5NGM|1|AA|C|1146
5NGM|1|AA|A|1147
5NGM|1|AA|C|1148
5NGM|1|AA|U|1149
5NGM|1|AA|A|1150
5NGM|1|AA|G|1151
5NGM|1|AA|U|1152
5NGM|1|AA|C|1153
5NGM|1|AA|G|1154
5NGM|1|AA|A|1155
5NGM|1|AA|G|1156

Current chains

Chain AA: 23S Ribosomal RNA

Nearby chains

Chain A4: 50S ribosomal protein L36
Chain AG: 50S ribosomal protein L6

IL_5NGM_185