IL_5NGM_188

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGC*GAGGAAGGUG

Length

55 nucleotides

Bulged bases

5NGM|1|Aa|U|1137, 5NGM|1|Aa|C|1140, 5NGM|1|Aa|U|1145, 5NGM|1|Aa|A|1147, 5NGM|1|Aa|U|1193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|U|1127
5NGM|1|Aa|A|1128
5NGM|1|Aa|A|1129
5NGM|1|Aa|G|1130
5NGM|1|Aa|C|1131
5NGM|1|Aa|U|1132
5NGM|1|Aa|U|1133
5NGM|1|Aa|A|1134
5NGM|1|Aa|G|1135
5NGM|1|Aa|U|1136
5NGM|1|Aa|U|1137
5NGM|1|Aa|G|1138
5NGM|1|Aa|C|1139
5NGM|1|Aa|C|1140
5NGM|1|Aa|A|1141
5NGM|1|Aa|U|1142
5NGM|1|Aa|C|1143
5NGM|1|Aa|A|1144
5NGM|1|Aa|U|1145
5NGM|1|Aa|U|1146
5NGM|1|Aa|A|1147
5NGM|1|Aa|A|1148
5NGM|1|Aa|G|1149
5NGM|1|Aa|U|1150
5NGM|1|Aa|U|1151
5NGM|1|Aa|G|1152
5NGM|1|Aa|G|1153
5NGM|1|Aa|G|1154
5NGM|1|Aa|C|1155
5NGM|1|Aa|A|1156
5NGM|1|Aa|C|1157
5NGM|1|Aa|U|1158
5NGM|1|Aa|C|1159
5NGM|1|Aa|U|1160
5NGM|1|Aa|A|1161
5NGM|1|Aa|A|1162
5NGM|1|Aa|G|1163
5NGM|1|Aa|U|1164
5NGM|1|Aa|U|1165
5NGM|1|Aa|G|1166
5NGM|1|Aa|A|1167
5NGM|1|Aa|C|1168
5NGM|1|Aa|U|1169
5NGM|1|Aa|G|1170
5NGM|1|Aa|C|1171
*
5NGM|1|Aa|G|1185
5NGM|1|Aa|A|1186
5NGM|1|Aa|G|1187
5NGM|1|Aa|G|1188
5NGM|1|Aa|A|1189
5NGM|1|Aa|A|1190
5NGM|1|Aa|G|1191
5NGM|1|Aa|G|1192
5NGM|1|Aa|U|1193
5NGM|1|Aa|G|1194

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S7

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z