IL_5NJT_017

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_017 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2544

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5NJT|1|A|U|417
5NJT|1|A|G|418
5NJT|1|A|A|419
5NJT|1|A|U|420
5NJT|1|A|G|421
5NJT|1|A|A|422
5NJT|1|A|A|423
5NJT|1|A|G|424
*
5NJT|1|A|C|435
5NJT|1|A|G|436
5NJT|1|A|U|437
5NJT|1|A|A|438
5NJT|1|A|A|439
5NJT|1|A|A|440
5NJT|1|A|G|441

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4