IL_5NJT_018

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CCAGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_018 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.2968

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

5NJT|1|A|U|448
5NJT|1|A|G|449
*
5NJT|1|A|C|502
5NJT|1|A|C|503
5NJT|1|A|A|504
5NJT|1|A|G|505
5NJT|1|A|A|506

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4