IL_5NJT_028

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_028 not in the Motif Atlas

Geometric match to IL_1KUQ_001

Geometric discrepancy: 0.1409

The information below is about IL_1KUQ_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

5NJT|1|A|G|663
5NJT|1|A|A|664
*
5NJT|1|A|U|760
5NJT|1|A|G|761
5NJT|1|A|A|762
5NJT|1|A|C|763

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15