IL_5NJT_029

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGC*GUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_029 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.2361

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

5NJT|1|A|U|666
5NJT|1|A|G|667
5NJT|1|A|C|668
*
5NJT|1|A|G|755
5NJT|1|A|U|756
5NJT|1|A|A|757
5NJT|1|A|A|758

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S15