IL_5NJT_036

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5NJT|1|A|A|1403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_036 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.2386

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5NJT|1|A|G|932
5NJT|1|A|A|933
*
5NJT|1|A|U|1402
5NJT|1|A|A|1403
5NJT|1|A|C|1404

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5