IL_5NJT_053

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAA*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_053 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2191

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NJT|1|A|C|1268
5NJT|1|A|G|1269
5NJT|1|A|A|1270
5NJT|1|A|A|1271
5NJT|1|A|A|1272
*
5NJT|1|A|U|1281
5NJT|1|A|U|1282
5NJT|1|A|A|1283
5NJT|1|A|A|1284
5NJT|1|A|G|1285

Current chains

Chain A

16S ribosomal RNA

Nearby chains