IL_5NJT_054

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_054 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.1346

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|A|C|1312
5NJT|1|A|G|1313
5NJT|1|A|G|1314
5NJT|1|A|A|1315
5NJT|1|A|U|1316
5NJT|1|A|C|1317
*
5NJT|1|A|G|1338
5NJT|1|A|U|1339
5NJT|1|A|G|1340
5NJT|1|A|A|1341
5NJT|1|A|A|1342
5NJT|1|A|G|1343

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13