IL_5NJT_057

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_057 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1945

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5NJT|1|A|G|1414
5NJT|1|A|U|1415
5NJT|1|A|C|1416
*
5NJT|1|A|G|1504
5NJT|1|A|U|1505
5NJT|1|A|C|1506

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain x

Ribosome hibernation promotion factor