IL_5NJT_079

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_079 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.2571

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5NJT|1|U|A|582
5NJT|1|U|G|583
5NJT|1|U|A|584
5NJT|1|U|G|585
*
5NJT|1|U|U|598
5NJT|1|U|G|599
5NJT|1|U|A|600
5NJT|1|U|U|601

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain j

50S ribosomal protein L20