IL_5NJT_081

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_081 not in the Motif Atlas

Homologous match to IL_4WF9_018

Geometric discrepancy: 0.3282

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

5NJT|1|U|C|639
5NJT|1|U|U|640
5NJT|1|U|C|641
*
5NJT|1|U|G|707
5NJT|1|U|U|708
5NJT|1|U|G|709

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain e

50S ribosomal protein L15

Chain s

50S ribosomal protein L35