IL_5NJT_086

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

5NJT|1|U|G|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_086 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2714

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|G|749
5NJT|1|U|U|750
5NJT|1|U|G|751
5NJT|1|U|A|752
5NJT|1|U|A|753
5NJT|1|U|G|754
*
5NJT|1|U|U|771
5NJT|1|U|G|772
5NJT|1|U|G|773
5NJT|1|U|A|774
5NJT|1|U|G|775
5NJT|1|U|G|776
5NJT|1|U|C|777

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L2