IL_5NJT_088
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5NJT|1|U|G|823, 5NJT|1|U|A|835, 5NJT|1|U|A|836, 5NJT|1|U|U|837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_088 not in the Motif Atlas
- Homologous match to IL_7RQB_023
- Geometric discrepancy: 0.1616
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NJT|1|U|G|822
5NJT|1|U|G|823
5NJT|1|U|G|824
*
5NJT|1|U|C|834
5NJT|1|U|A|835
5NJT|1|U|A|836
5NJT|1|U|U|837
5NJT|1|U|C|838
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain Y
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L22
- Chain r
- 50S ribosomal protein L34
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