IL_5NJT_103
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 5NJT|1|U|A|1189
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_103 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.1596
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5NJT|1|U|U|1064
5NJT|1|U|U|1065
5NJT|1|U|A|1066
5NJT|1|U|A|1067
5NJT|1|U|G|1068
5NJT|1|U|U|1069
5NJT|1|U|G|1070
*
5NJT|1|U|C|1186
5NJT|1|U|U|1187
5NJT|1|U|A|1188
5NJT|1|U|A|1189
5NJT|1|U|A|1190
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain c
- 50S ribosomal protein L13
- Chain t
- 50S ribosomal protein L36
Coloring options: