IL_5NJT_105
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 5NJT|1|U|U|1079
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_105 not in the Motif Atlas
- Homologous match to IL_7RQB_041
- Geometric discrepancy: 0.1488
- The information below is about IL_7RQB_041
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_43275.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
5NJT|1|U|G|1077
5NJT|1|U|A|1078
5NJT|1|U|U|1079
5NJT|1|U|G|1080
*
5NJT|1|U|C|1167
5NJT|1|U|G|1168
5NJT|1|U|C|1169
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain a
- 50S ribosomal protein L6
- Chain c
- 50S ribosomal protein L13
- Chain f
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L36
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